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Visit my GitHub to view my scripts, file organization, and notes for my PhD bioinformatics projects: https://github.com/ahfulford
I use GitHub as a repository to store bash, R, and python scripts for the analysis of microbial sequences. You can find code showing how I went about analyzing microbial populations from a brine-dominated hydrothermal vent field for:
- 16S rRNA gene sequence processing and data analysis
- Metagenomic assembly, binning, functional and taxonomic annotation, and community-level analyses
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Visit my HackMD profile to view my published computational lab notebooks and tutorial-style bioinformatics notes: https://hackmd.io/@averyfulford
I use my profile at HackMD.io as a computational lab notebook where I keep code, notes, resources, and my overall bioinformatics strategy and pipelines. You can find the following published lab notebooks showing how I went about analyzing microbial populations from a brine-dominated hydrothermal vent field:
- 16S rRNA gene sequence processing and data analysis
- Metagenomic sequence processing, quality control, and assembly
- Metagenomic binning, quality assessment, refinement, and deduplication
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Visit my profile on Protocols.io to read the laboratory protocols I've modified and/or developed: https://www.protocols.io/researchers/avery-fulford/workspaces
At my profile, you can find laboratory protocols for the extraction and purification of DNA, RNA, and proteins from:
- crushed hydrothermal vent chimneys
- 0.22µm-filtered diffuse flow fluids
- microbial cultures